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Nextstrain

Real-time tracking of pathogen evolution

221 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 409
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 276 136
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 309 171

Repositories

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Showing 10 of 100 repositories

nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 45 42 10 17 Updated Apr 21, 2026
measles Public
Nextstrain build for measles virus

nextstrain/measles’s past year of commit activity

Python 3 9 8 7 Updated Apr 21, 2026
conda-base Public
Conda package build for nextstrain-base

nextstrain/conda-base’s past year of commit activity

Shell 1 1 4 2 Updated Apr 21, 2026
yellow-fever Public

nextstrain/yellow-fever’s past year of commit activity

Python 2 5 0 0 Updated Apr 20, 2026
zika Public
Nextstrain build for Zika virus

nextstrain/zika’s past year of commit activity

Python 10 11 5 2 Updated Apr 20, 2026
seasonal-cov Public
Nextstrain build for seasonal coronaviruses

nextstrain/seasonal-cov’s past year of commit activity

Python 1 0 1 0 Updated Apr 20, 2026
rubella Public
Nextstrain build for rubella virus

nextstrain/rubella’s past year of commit activity

Python 2 2 3 2 Updated Apr 20, 2026
rsv Public
Workflow for RSV analyses on Nextstrain.org

nextstrain/rsv’s past year of commit activity

Python 11 6 9 4 Updated Apr 20, 2026
rabies Public

nextstrain/rabies’s past year of commit activity

Python 0 1 5 0 Updated Apr 20, 2026
pathogen-repo-guide Public template

nextstrain/pathogen-repo-guide’s past year of commit activity

Python 4 1 24 0 Updated Apr 21, 2026

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