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new module: deeptools/bamcompare

new moduleAdding a new moduleAdding a new module

Status: Open.

#11146 In nf-core/modules;

· oliverdrechsel opened on Apr 10, 2026

Inconsistency of alignment subworkflows and aligner modules

bugSomething isn't workingSomething isn't working

Status: Open.

#11138 In nf-core/modules;

· Kevin-Brockers opened on Apr 8, 2026

Update cnvkit to also take indices as inputs

Status: Open.

#11132 In nf-core/modules;

· famosab opened on Apr 8, 2026

new module: vcfpartition

new moduleAdding a new moduleAdding a new module

Status: Open.

#11097 In nf-core/modules;

· camlloyd opened on Mar 31, 2026

Seqkit_pair unknown recognition error type: groovyjarjarantlr4.v4.runtime.LexerNoViableAltException

bugSomething isn't workingSomething isn't working

Status: Open.

#11090 In nf-core/modules;

· Slucking opened on Mar 30, 2026

[FEATURE] cellrangerarc/count should allow multiple input files with the same basename

enhancementNew feature or requestNew feature or request

Status: Open.

Enhancement

#11088 In nf-core/modules;

· tgelafr-pfzr opened on Mar 30, 2026

new module: poppunk/createdb

new moduleAdding a new moduleAdding a new module

Status: Open.

#11084 In nf-core/modules;

· cwoodside1278 opened on Mar 29, 2026

new module: metacerberus/annotation

new moduleAdding a new moduleAdding a new module

Status: Open.

#11083 In nf-core/modules;

· daasabogalro opened on Mar 28, 2026

new module: metacerberus/database_download

new moduleAdding a new moduleAdding a new module

Status: Open.

#11082 In nf-core/modules;

· daasabogalro opened on Mar 28, 2026

new module: singleM/pipe

new moduleAdding a new moduleAdding a new module

Status: Open.

#11081 In nf-core/modules;

· daasabogalro opened on Mar 28, 2026

new module: civicpy/anotate

new moduleAdding a new moduleAdding a new module

Status: Open.

#11076 In nf-core/modules;

· emmcauley opened on Mar 27, 2026

Review subworkflows: remove thin wrappers, migrate utility functions to plugins

Status: Open.

#11075 In nf-core/modules;

· FriederikeHanssen opened on Mar 27, 2026