Parse files in parallel when possible

mypy/build.py

@@ -26,7 +26,8 @@
 import sys
 import time
 import types
-from collections.abc import Callable, Iterator, Mapping, Sequence, Set as AbstractSet
+from collections.abc import Callable, Iterable, Iterator, Mapping, Sequence, Set as AbstractSet
+from concurrent.futures import FIRST_EXCEPTION, ThreadPoolExecutor, wait
 from heapq import heappop, heappush
 from textwrap import dedent
 from typing import (
@@ -125,6 +126,7 @@
 from mypy.util import (
     DecodeError,
     decode_python_encoding,
+    get_available_threads,
     get_mypy_comments,
     hash_digest,
     hash_digest_bytes,
@@ -947,6 +949,60 @@ def dump_stats(self) -> None:
             for key, value in sorted(self.stats_summary().items()):
                 print(f"{key + ':':24}{value}")
 
+    def parse_all(self, states: Iterable[State]) -> None:
+        """Parse multiple files in parallel (if possible) and compute dependencies.
+
+        Note: this duplicates a bit of logic from State.parse_file(). This is done
+        as a micro-optimization to parallelize only those parts of the code that
+        can be parallelized efficiently.
+        """
+        if self.options.native_parser:
+            futures = []
+            parsed_states = set()
+            available_threads = get_available_threads()
+            # Overhead from trying to parallelize (small) blocking portion of
+            # parse_file_inner() results in no visible improvement with more than 8 threads.
+            with ThreadPoolExecutor(max_workers=min(available_threads, 8)) as executor:
+                for state in states:
+                    state.needs_parse = False
+                    if state.tree is not None:
+                        # The file was already parsed.
+                        continue
+                    # New parser reads source from file directly, we do this only for
+                    # the side effect of parsing inline mypy configurations.
+                    state.get_source()
+                    if state.id not in self.ast_cache:
+                        futures.append(executor.submit(state.parse_file_inner, state.source or ""))
+                        parsed_states.add(state)
+                    else:
+                        self.log(f"Using cached AST for {state.xpath} ({state.id})")
+                        state.tree, state.early_errors = self.ast_cache[state.id]
+                for fut in wait(futures, return_when=FIRST_EXCEPTION).done:
+                    # This will raise exceptions, if any.
+                    fut.result()
+
+            for state in states:
+                assert state.tree is not None
+                if state in parsed_states:
+                    state.early_errors = list(self.errors.error_info_map.get(state.xpath, []))
+                    state.semantic_analysis_pass1()
+                    self.ast_cache[state.id] = (state.tree, state.early_errors)
+                self.modules[state.id] = state.tree
+                state.check_blockers()
+                state.setup_errors()
+        else:
+            # Old parser cannot be parallelized.
+            for state in states:
+                state.parse_file()
+
+        for state in states:
+            state.compute_dependencies()
+            if self.workers and state.tree:
+                # We don't need imports in coordinator process anymore, we parse only to
+                # compute dependencies.
+                state.tree.imports = []
+                del self.ast_cache[state.id]
+
     def use_fine_grained_cache(self) -> bool:
         return self.cache_enabled and self.options.use_fine_grained_cache
 
@@ -2502,8 +2558,7 @@ def new_state(
                 # we need to re-calculate dependencies.
                 # NOTE: see comment below for why we skip this in fine-grained mode.
                 if exist_added_packages(suppressed, manager):
-                    state.parse_file()  # This is safe because the cache is anyway stale.
-                    state.compute_dependencies()
+                    state.needs_parse = True  # This is safe because the cache is anyway stale.
                 # This is an inverse to the situation above. If we had an import like this:
                 #     from pkg import mod
                 # and then mod was deleted, we need to force recompute dependencies, to
@@ -2512,8 +2567,7 @@ def new_state(
                 #     import pkg
                 #     import pkg.mod
                 if exist_removed_submodules(dependencies, manager):
-                    state.parse_file()  # Same as above, the current state is stale anyway.
-                    state.compute_dependencies()
+                    state.needs_parse = True  # Same as above, the current state is stale anyway.
             state.size_hint = meta.size
         else:
             # When doing a fine-grained cache load, pretend we only
@@ -2523,14 +2577,17 @@ def new_state(
                 manager.log(f"Deferring module to fine-grained update {path} ({id})")
                 raise ModuleNotFound
 
-            # Parse the file (and then some) to get the dependencies.
-            state.parse_file(temporary=temporary)
-            state.compute_dependencies()
-            if manager.workers and state.tree:
-                # We don't need imports in coordinator process anymore, we parse only to
-                # compute dependencies.
-                state.tree.imports = []
-                del manager.ast_cache[id]
+            if temporary:
+                # Eagerly parse temporary states, they are needed rarely.
+                state.parse_file(temporary=True)
+                state.compute_dependencies()
+                if state.manager.workers and state.tree:
+                    # We don't need imports in coordinator process anymore, we parse only to
+                    # compute dependencies.
+                    state.tree.imports = []
+                    del state.manager.ast_cache[state.id]
+            else:
+                state.needs_parse = True
 
         return state
 
@@ -2593,6 +2650,8 @@ def __init__(
         # Pre-computed opaque value of suppressed_deps_opts() used
         # to minimize amount of data sent to parallel workers.
         self.known_suppressed_deps_opts: bytes | None = None
+        # An internal flag used by build manager to schedule states for parsing.
+        self.needs_parse = False
 
     def write(self, buf: WriteBuffer) -> None:
         """Serialize State for sending to build worker.
@@ -2816,26 +2875,9 @@ def fix_cross_refs(self) -> None:
 
     # Methods for processing modules from source code.
 
-    def parse_file(self, *, temporary: bool = False, raw_data: FileRawData | None = None) -> None:
-        """Parse file and run first pass of semantic analysis.
-
-        Everything done here is local to the file. Don't depend on imported
-        modules in any way. Also record module dependencies based on imports.
-        """
-        if self.tree is not None:
-            # The file was already parsed (in __init__()).
-            return
-
+    def get_source(self) -> str:
+        """Get module source and parse inline mypy configurations."""
         manager = self.manager
-
-        # Can we reuse a previously parsed AST? This avoids redundant work in daemon.
-        cached = self.id in manager.ast_cache
-        modules = manager.modules
-        if not cached:
-            manager.log(f"Parsing {self.xpath} ({self.id})")
-        else:
-            manager.log(f"Using cached AST for {self.xpath} ({self.id})")
-
         t0 = time_ref()
 
         with self.wrap_context():
@@ -2877,33 +2919,53 @@ def parse_file(self, *, temporary: bool = False, raw_data: FileRawData | None =
             self.check_for_invalid_options()
 
             self.size_hint = len(source)
-            if not cached:
-                ignore_errors = self.ignore_all or self.options.ignore_errors
-                self.tree = manager.parse_file(
-                    self.id,
-                    self.xpath,
-                    source,
-                    ignore_errors=ignore_errors,
-                    options=self.options,
-                    raw_data=raw_data,
-                )
-            else:
-                # Reuse a cached AST
-                self.tree = manager.ast_cache[self.id][0]
+        self.time_spent_us += time_spent_us(t0)
+        return source
 
+    def parse_file_inner(self, source: str, raw_data: FileRawData | None = None) -> None:
+        t0 = time_ref()
+        self.manager.log(f"Parsing {self.xpath} ({self.id})")
+        with self.wrap_context():
+            ignore_errors = self.ignore_all or self.options.ignore_errors
+            self.tree = self.manager.parse_file(
+                self.id,
+                self.xpath,
+                source,
+                ignore_errors=ignore_errors,
+                options=self.options,
+                raw_data=raw_data,
+            )
         self.time_spent_us += time_spent_us(t0)
 
-        if not cached:
+    def parse_file(self, *, temporary: bool = False, raw_data: FileRawData | None = None) -> None:
+        """Parse file and run first pass of semantic analysis.
+
+        Everything done here is local to the file. Don't depend on imported
+        modules in any way. Logic here should be kept in sync with BuildManager.parse_all().
+        """
+        self.needs_parse = False
+        if self.tree is not None:
+            # The file was already parsed.
+            return
+
+        source = self.get_source()
+        manager = self.manager
+        # Can we reuse a previously parsed AST? This avoids redundant work in daemon.
+        if self.id not in manager.ast_cache:
+            self.parse_file_inner(source, raw_data)
             # Make a copy of any errors produced during parse time so that
             # fine-grained mode can repeat them when the module is
             # reprocessed.
             self.early_errors = list(manager.errors.error_info_map.get(self.xpath, []))
             self.semantic_analysis_pass1()
         else:
-            self.early_errors = manager.ast_cache[self.id][1]
+            # Reuse a cached AST
+            manager.log(f"Using cached AST for {self.xpath} ({self.id})")
+            self.tree, self.early_errors = manager.ast_cache[self.id]
 
+        assert self.tree is not None
         if not temporary:
-            modules[self.id] = self.tree
+            manager.modules[self.id] = self.tree
             self.check_blockers()
 
         manager.ast_cache[self.id] = (self.tree, self.early_errors)
@@ -3075,14 +3137,15 @@ def detect_possibly_undefined_vars(self) -> None:
         if manager.errors.is_error_code_enabled(
             codes.POSSIBLY_UNDEFINED
         ) or manager.errors.is_error_code_enabled(codes.USED_BEFORE_DEF):
-            self.tree.accept(
-                PossiblyUndefinedVariableVisitor(
-                    MessageBuilder(manager.errors, manager.modules),
-                    self.type_map(),
-                    self.options,
-                    self.tree.names,
+            with self.wrap_context():
+                self.tree.accept(
+                    PossiblyUndefinedVariableVisitor(
+                        MessageBuilder(manager.errors, manager.modules),
+                        self.type_map(),
+                        self.options,
+                        self.tree.names,
+                    )
                 )
-            )
 
     def finish_passes(self) -> None:
         assert self.tree is not None, "Internal error: method must be called on parsed file only"
@@ -3304,14 +3367,16 @@ def generate_unused_ignore_notes(self) -> None:
             if self.meta and self.options.fine_grained_incremental:
                 self.verify_dependencies(suppressed_only=True)
             is_typeshed = self.tree is not None and self.tree.is_typeshed_file(self.options)
-            self.manager.errors.generate_unused_ignore_errors(self.xpath, is_typeshed)
+            with self.wrap_context():
+                self.manager.errors.generate_unused_ignore_errors(self.xpath, is_typeshed)
 
     def generate_ignore_without_code_notes(self) -> None:
         if self.manager.errors.is_error_code_enabled(codes.IGNORE_WITHOUT_CODE):
             is_typeshed = self.tree is not None and self.tree.is_typeshed_file(self.options)
-            self.manager.errors.generate_ignore_without_code_errors(
-                self.xpath, self.options.warn_unused_ignores, is_typeshed
-            )
+            with self.wrap_context():
+                self.manager.errors.generate_ignore_without_code_errors(
+                    self.xpath, self.options.warn_unused_ignores, is_typeshed
+                )
 
 
 # Module import and diagnostic glue
@@ -3616,12 +3681,14 @@ def skipping_ancestor(manager: BuildManager, id: str, path: str, ancestor_for: S
     # immediately if it's empty or only contains comments.
     # But beware, some package may be the ancestor of many modules,
     # so we'd need to cache the decision.
+    save_import_context = manager.errors.import_context()
     manager.errors.set_import_context([])
     manager.errors.set_file(ancestor_for.xpath, ancestor_for.id, manager.options)
     manager.error(None, f'Ancestor package "{id}" ignored', only_once=True)
     manager.note(
         None, "(Using --follow-imports=error, submodule passed on command line)", only_once=True
     )
+    manager.errors.set_import_context(save_import_context)
 
 
 def log_configuration(manager: BuildManager, sources: list[BuildSource]) -> None:
@@ -3909,14 +3976,23 @@ def load_graph(
         graph[st.id] = st
         new.append(st)
         entry_points.add(bs.module)
+    manager.parse_all([state for state in new if state.needs_parse])
 
     # Note: Running this each time could be slow in the daemon. If it's a problem, we
     # can do more work to maintain this incrementally.
     seen_files = {st.abspath: st for st in graph.values() if st.path}
 
     # Collect dependencies.  We go breadth-first.
     # More nodes might get added to new as we go, but that's fine.
+    ready = set(new)
+    not_ready: set[State] = set()
     for st in new:
+        if st not in ready:
+            # We have run out of states, parse all we have.
+            assert st in not_ready
+            manager.parse_all(not_ready)
+            ready |= not_ready
+            not_ready.clear()
         assert st.ancestors is not None
         # Strip out indirect dependencies.  These will be dealt with
         # when they show up as direct dependencies, and there's a
@@ -3972,6 +4048,7 @@ def load_graph(
                         newst_path = newst.abspath
 
                         if newst_path in seen_files:
+                            manager.errors.set_file(newst.xpath, newst.id, manager.options)
                             manager.error(
                                 None,
                                 "Source file found twice under different module names: "
@@ -3992,6 +4069,10 @@ def load_graph(
                     assert newst.id not in graph, newst.id
                     graph[newst.id] = newst
                     new.append(newst)
+                    if newst.needs_parse:
+                        not_ready.add(newst)
+                    else:
+                        ready.add(newst)
     # There are two things we need to do after the initial load loop. One is up-suppress
     # modules that are back in graph. We need to do this after the loop to cover edge cases
     # like where a namespace package ancestor is shared by a typed and an untyped package.

mypy/metastore.py

@@ -157,7 +157,7 @@ def close(self) -> None:
 def connect_db(db_file: str) -> sqlite3.Connection:
     import sqlite3.dbapi2
 
-    db = sqlite3.dbapi2.connect(db_file)
+    db = sqlite3.dbapi2.connect(db_file, check_same_thread=False)
     # This is a bit unfortunate (as we may get corrupt cache after e.g. Ctrl + C),
     # but without this flag, commits are *very* slow, especially when using HDDs,
     # see https://www.sqlite.org/faq.html#q19 for details.

mypy/nativeparse.py

@@ -20,6 +20,7 @@
 from __future__ import annotations
 
 import os
+import time
 from typing import Any, Final, cast
 
 import ast_serialize  # type: ignore[import-untyped, import-not-found, unused-ignore]
@@ -273,6 +274,10 @@ def read_statements(state: State, data: ReadBuffer, n: int) -> list[Statement]:
 def parse_to_binary_ast(
     filename: str, options: Options, skip_function_bodies: bool = False
 ) -> tuple[bytes, list[dict[str, Any]], TypeIgnores, bytes, bool, bool]:
+    # This is a horrible hack to work around a mypyc bug where imported
+    # module may be not ready in a thread sometimes.
+    while ast_serialize is None:
+        time.sleep(0.0001)  # type: ignore[unreachable]
     ast_bytes, errors, ignores, import_bytes, ast_data = ast_serialize.parse(
         filename,
         skip_function_bodies=skip_function_bodies,

mypy/semanal_main.py

@@ -463,17 +463,18 @@ def apply_class_plugin_hooks(graph: Graph, scc: list[str], errors: Errors) -> No
             state = graph[module]
             tree = state.tree
             assert tree
-            for _, node, _ in tree.local_definitions():
-                if isinstance(node.node, TypeInfo):
-                    if not apply_hooks_to_class(
-                        state.manager.semantic_analyzer,
-                        module,
-                        node.node,
-                        state.options,
-                        tree,
-                        errors,
-                    ):
-                        incomplete = True
+            with state.wrap_context():
+                for _, node, _ in tree.local_definitions():
+                    if isinstance(node.node, TypeInfo):
+                        if not apply_hooks_to_class(
+                            state.manager.semantic_analyzer,
+                            module,
+                            node.node,
+                            state.options,
+                            tree,
+                            errors,
+                        ):
+                            incomplete = True
 
 
 def apply_hooks_to_class(