More carefully define two-locus haplotypes in docs#3447
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apragsdale wants to merge 1 commit intotskit-dev:mainfrom
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More carefully define two-locus haplotypes in docs#3447apragsdale wants to merge 1 commit intotskit-dev:mainfrom
apragsdale wants to merge 1 commit intotskit-dev:mainfrom
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #3447 +/- ##
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Coverage 91.66% 91.66%
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Files 38 38
Lines 32184 32184
Branches 5150 5150
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Hits 29503 29503
Misses 2348 2348
Partials 333 333
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petrelharp
reviewed
Apr 15, 2026
petrelharp
reviewed
Apr 15, 2026
Contributor
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Thanks for this. Good start, needs more preciseness. |
Contributor
Author
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Gotta run to some things today, but tried to add some preciseness here. Thanks Peter. |
petrelharp
reviewed
Apr 17, 2026
petrelharp
reviewed
Apr 17, 2026
petrelharp
reviewed
Apr 17, 2026
Contributor
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A few more suggestions... |
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As pointed out in #3445, there is room for improvement in defining the haplotype counts that are passed to the summary functions in the two-locus statistics methods. This more carefully defines those, following advice from @petrelharp, and clarifies the number of times summary functions are called for a given number of alleles at the left and right loci.